POLYMER GENOMICS
HLA·6 transplant loci · biophysics divergence
§ HLA · 6 transplant loci · 32,867 named alleles

HLA biophysics

Allele-level biophysics for transplant loci. Non-coding divergence (NCDS), expression tier inference, and pairwise comparison at base-pair resolution. Coding-identity-matched alleles can still differ markedly in non-coding regions — that signal is what Polymer surfaces.

§01LociSelected: HLA-B · class I
§02Alleles9 representative · sorted by global frequency
AlleleIMGT namePopulationExpressionCoding IDNCDSNotable
AB*07:02HLA-B*07:02:01:01eur · 11.4 %HIGH100.0 %0.000
BB*08:01HLA-B*08:01:01:01eur · 9.7 %MED98.7 %0.062celiac
B*44:02HLA-B*44:02:01:01eur · 9.1 %HIGH98.5 %0.067
B*35:01HLA-B*35:01:01:01global · 7.4 %MED97.9 %0.091
B*15:01HLA-B*15:01:01:01global · 5.8 %HIGH98.3 %0.078
B*58:01HLA-B*58:01:01:01eas · 5.5 %LOW97.1 %0.121allopurinol SCAR
B*51:01HLA-B*51:01:01:01global · 5.2 %MED97.4 %0.114Behçet
B*27:05HLA-B*27:05:02:01eur · 4.6 %HIGH98.1 %0.084ankylosing spondylitis
B*57:01HLA-B*57:01:01:01eur · 3.9 %HIGH97.6 %0.103HIV control · abacavir HSR
§03Pairwise non-coding divergencebiophysics signature across gene span
Pairwise comparison
AB*07:02
vs
BB*08:01
Δ = 0.402
0 %25 %50 %75 %100 %gene span · non-coding biophysics signature0.00.51.0
A · B*07:02B · B*08:01|A − B|
§04Locus-wide divergence distributionall pairs at HLA-B
mean 0.283max 0.4120.000.050.100.150.200.250.30pairwise non-coding divergence · 36 pairsDENSITY