POLYMER GENOMICS
Genome-wide DNA biophysics  ·  hg38 + hg37

Polymer Genomics

The material channel of the genome — stacking energy, curvature, flexibility, groove geometry — computed at base-pair resolution and cross-indexed with 50 genomic layers. Queryable by humans and by agents.

Open Viewer Chromosome AtlasAPI & MCP for agents
50layers29.4MCpG sites937Kprobes63Ktranscripts70MCP tools
§01Browse
Genome viewerBrowse any locus with biophysics layers — stacking energy, curvature, CpG density, isochores. hg38 + hg37.50 layersAtlasGENCODE v44 gene profiles with expression, pathways, constraint, biosynthetic cost.63K txs
§02Analyze
EvaluatePhysics linter for any DNA sequence. Thermodynamic profile, CpG islands, structural flags, batch mode.13 flagsMethylationDMP volcano and Manhattan plots, TE/ERV family scoring, reactivation risk, Retro-Age clock.937K probesEpigenetic clocksProbe anatomy, cross-clock comparison, coefficient application.6 clocksTransposomeTransposable elements with TE age, awakening potential, EPIC v2 probe overlap.5.6M TEsHLAAllele biophysics for transplant loci. Non-coding divergence, expression mismatch scoring.6 lociClaimsFormal claim records with premise · operation · statistic · inference · conclusion. Latent space projection.IR v1.2
§03Build
API & MCPREST endpoints and Model Context Protocol for AI agents. Reference + compute tools, evidence-class metadata.70 toolsDevelopersQuickstart, code examples, try-it evaluator, data inventory. Python SDK on PyPI.pip install